ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 33201.00 92.41 437.88 98.26 RPL4-202 retained intron HT-29 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 269.00 0.75 3.55 100.0 RPL4-202 retained intron HT-29 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 13.00 0.04 0.17 100.0 RPL4-202 retained intron HT-29 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 2.00 0.01 0.03 100.0 RPL4-202 retained intron HT-29 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 214.00 0.60 2.82 100.0 RPL4-202 retained intron HT-29 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 22.00 0.67 0.29 100.0 ENST00000563103 lncRNA HT-29 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 7201.00 86.87 94.97 100.0 RPL4-207 retained intron HT-29 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 58.00 0.70 0.76 100.0 RPL4-207 retained intron HT-29 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 400.00 36.97 5.28 90.7 ENST00000565336 lncRNA HT-29 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 355.00 32.81 4.68 85.13 ENST00000565336 lncRNA HT-29 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 55.00 0.14 0.73 100.0 RBMX-210 retained intron HT-29 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 63.00 0.16 0.83 100.0 RBMX-210 retained intron HT-29 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 364.00 0.95 4.80 100.0 RBMX-210 retained intron HT-29 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 36082.00 94.25 475.87 98.87 RBMX-210 retained intron HT-29 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 801.00 53.72 10.56 100.0 RPL4-214 retained intron HT-29 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 183.00 12.27 2.41 100.0 RPL4-214 retained intron HT-29 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 27.00 2.92 0.36 100.0 POLG-DT-202 lncRNA HT-29 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 370.99 40.15 4.89 78.1 POLG-DT-202 lncRNA HT-29 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 231.13 25.01 3.05 44.36 POLG-DT-202 lncRNA HT-29 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 81.00 24.77 1.07 100.0 ENST00000570843 lncRNA HT-29 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 1945.00 98.93 25.65 99.18 MIR22HG-212 lncRNA HT-29 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 8.00 0.11 0.11 22.22 SNORD53B-201 snoRNA HT-29 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 5106.00 67.67 67.34 68.62 SNORD53B-201 snoRNA HT-29 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 28.00 0.37 0.37 77.78 SNORD53B-201 snoRNA HT-29 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 113.00 84.96 1.49 100.0 ENST00000578036 lncRNA HT-29 (Cell line)