ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 20.00 0.67 0.26 100.0 GNL3-211 retained intron HT-29 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 2816.00 94.59 37.14 100.0 GNL3-211 retained intron HT-29 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 621.00 74.55 8.19 100.0 RPL5-205 retained intron HT-29 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 23.00 2.76 0.30 100.0 RPL5-205 retained intron HT-29 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 217.00 37.48 2.86 100.0 ZBED9-AS1-201 lncRNA HT-29 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1049.00 85.22 13.83 100.0 RPS3A-206 retained intron HT-29 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 2607.00 98.38 34.38 100.0 COX7C-203 protein coding HT-29 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 8122.52 69.36 107.13 72.69 RACK1-229 protein coding HT-29 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 2875.90 24.56 37.93 25.25 RACK1-229 protein coding HT-29 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 7.00 0.06 0.09 63.64 RACK1-229 protein coding HT-29 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 1.00 0.01 0.01 100.0 RACK1-229 protein coding HT-29 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 24063.00 76.77 317.36 85.66 RACK1-230 retained intron HT-29 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 6543.00 20.88 86.29 65.72 RACK1-230 retained intron HT-29 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 3.00 5.00 0.04 100.0 RNA5SP486-201 rRNA pseudogene HT-29 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 46.00 86.79 0.61 100.0 SCARNA5-201 scaRNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 17.00 0.14 0.22 100.0 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 5.00 0.04 0.07 100.0 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 948.00 7.66 12.50 94.52 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 155.00 1.25 2.04 90.64 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 113.00 0.91 1.49 47.48 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 112.00 0.90 1.48 96.55 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 37.00 0.30 0.49 100.0 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 443.00 3.58 5.84 88.96 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 18.00 0.15 0.24 100.0 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 10.00 0.08 0.13 27.78 RNY4-201 misc RNA HT-29 (Cell line)