ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 9069.00 73.27 119.61 100.0 RNY4-201 misc RNA HT-29 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 2237.00 72.25 29.50 100.0 SNHG6-204 retained intron HT-29 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 1132.00 16.36 14.93 100.0 MIR151A-201 miRNA HT-29 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 5041.00 72.86 66.48 88.49 MIR151A-201 miRNA HT-29 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 146.00 90.12 1.93 100.0 DENND3-221 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 1.00 0.00 0.01 100.0 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 307.00 0.34 4.05 68.53 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 1.00 0.00 0.01 100.0 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 1055.00 1.18 13.91 100.0 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 60.00 0.07 0.79 100.0 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 2.00 0.00 0.03 100.0 WDR74-204 protein coding HT-29 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 1.00 0.00 0.01 100.0 WDR74-204 protein coding HT-29 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 12671.00 86.52 167.11 100.0 HSPA8-211 retained intron HT-29 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 2.00 1.42 0.03 100.0 SCARNA9-201 lncRNA HT-29 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 85066.00 91.10 1121.91 100.0 TAF1D-215 retained intron HT-29 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 4576.00 4.90 60.35 100.0 TAF1D-215 retained intron HT-29 (Cell line)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 40.00 1.15 0.53 100.0 HSPA8-215 retained intron HT-29 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 2933.00 84.21 38.68 100.0 HSPA8-215 retained intron HT-29 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 45.00 1.29 0.59 100.0 HSPA8-215 retained intron HT-29 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 66.00 14.63 0.87 100.0 RPS2-215 retained intron HT-29 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 77516.00 90.88 1022.33 91.99 ENST00000548801 lncRNA HT-29 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 333.00 28.61 4.39 100.0 ENST00000554988 lncRNA HT-29 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 130.00 11.17 1.71 100.0 ENST00000554988 lncRNA HT-29 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 18.00 1.55 0.24 100.0 ENST00000554988 lncRNA HT-29 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 72.00 97.30 0.95 100.0 TEKT4P2-201 transcribed unprocessed pseudogene HT-29 (Cell line)