ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 126.00 17.90 1.66 47.73 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 134.97 19.17 1.78 78.02 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 58.88 8.36 0.78 33.08 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 411.00 79.04 5.42 90.53 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 118.00 11.45 1.56 59.9 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 51.00 0.55 0.67 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 109.00 1.77 1.44 80.15 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 26.00 40.62 0.34 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 169.00 25.34 2.23 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 10230.00 89.79 134.92 97.21 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 4.00 0.20 0.05 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 365.00 18.39 4.81 69.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 20.00 33.33 0.26 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 11.00 6.63 0.15 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 1835.00 90.00 24.20 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 56.00 84.85 0.74 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 2321.00 62.34 30.61 95.67 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 35.00 0.94 0.46 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 62.00 0.67 0.82 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 172.00 63.47 2.27 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 45.00 11.31 0.59 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 92.00 19.41 1.21 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 49.00 10.34 0.65 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 7.00 1.48 0.09 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 1.00 25.00 0.01 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA HT-29 (Cell line)