ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 7.00 2.19 0.09 100.0 SNORD66-201 snoRNA HT-29 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 40.00 12.54 0.53 100.0 SNORD66-201 snoRNA HT-29 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 76.00 23.82 1.00 100.0 SNORD66-201 snoRNA HT-29 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 27.00 64.29 0.36 100.0 U3.17-201 snoRNA HT-29 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 45.00 20.74 0.59 100.0 SNORD17-201 snoRNA HT-29 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 272.00 45.26 3.59 100.0 SNORD72-201 snoRNA HT-29 (Cell line)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 493.00 76.67 6.50 100.0 SNORD70B-201 snoRNA HT-29 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 38.00 43.68 0.50 95.0 RNY4P18-201 misc RNA HT-29 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 639.00 35.44 8.43 68.56 SNORD90-201 snoRNA HT-29 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 983.00 54.52 12.96 100.0 SNORD90-201 snoRNA HT-29 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 23.00 0.23 0.30 100.0 SNORD69-201 snoRNA HT-29 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 9517.00 96.92 125.52 100.0 SNORD69-201 snoRNA HT-29 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 33.00 0.34 0.44 100.0 SNORD69-201 snoRNA HT-29 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 11.00 0.11 0.15 100.0 SNORD69-201 snoRNA HT-29 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 867.00 61.23 11.43 90.41 SNORD70-201 snoRNA HT-29 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 2240.00 81.45 29.54 88.4 B4GALNT2-202 protein coding HT-29 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 88.00 3.20 1.16 100.0 B4GALNT2-202 protein coding HT-29 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 22.00 84.62 0.29 100.0 NDE1-202 protein coding HT-29 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 5464.00 85.06 72.06 100.0 SNORD111-201 snoRNA HT-29 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 1269.00 47.98 16.74 71.29 SNORD88A-201 snoRNA HT-29 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 69.00 97.18 0.91 100.0 MIR548K-201 miRNA HT-29 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 11.00 61.11 0.15 100.0 MIR320B2-201 miRNA HT-29 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 16698.00 97.51 220.22 100.0 SNORD100-201 snoRNA HT-29 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 68.00 0.40 0.90 100.0 SNORD100-201 snoRNA HT-29 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 19.00 0.11 0.25 100.0 SNORD100-201 snoRNA HT-29 (Cell line)