ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 16698.00 97.51 220.22 100.0 SNORD100-201 snoRNA HT-29 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 34.00 12.64 0.45 100.0 SNORD111B-201 snoRNA HT-29 (Cell line)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 1.00 0.81 0.01 100.0 RNU2-36P-201 snRNA HT-29 (Cell line)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 41.00 33.33 0.54 100.0 RNU2-36P-201 snRNA HT-29 (Cell line)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 22.00 0.09 0.29 100.0 SNORD19C-201 snoRNA HT-29 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 21582.00 88.78 284.64 92.14 SNORD19C-201 snoRNA HT-29 (Cell line)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 39.00 0.02 0.51 100.0 SNORD12B-201 snoRNA HT-29 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 141267.00 90.32 1863.12 94.16 SNORD12B-201 snoRNA HT-29 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 2313.00 1.48 30.51 100.0 SNORD12B-201 snoRNA HT-29 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 30.00 41.67 0.40 100.0 Y_RNA.609-201 misc RNA HT-29 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 2.00 12.50 0.03 100.0 Y_RNA.612-201 misc RNA HT-29 (Cell line)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 414.00 3.69 5.46 100.0 SNORD71-201 snoRNA HT-29 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 1.00 0.01 0.01 100.0 SNORD71-201 snoRNA HT-29 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 10491.00 93.45 138.36 97.65 SNORD71-201 snoRNA HT-29 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 21131.00 89.55 278.69 92.66 MIR194-2HG-201 lncRNA HT-29 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 2154.00 9.13 28.41 50.89 MIR194-2HG-201 lncRNA HT-29 (Cell line)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 8.00 3.12 0.11 100.0 LINC01783-201 lncRNA HT-29 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 17.00 94.44 0.22 100.0 RPS7P15-201 processed pseudogene HT-29 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 6.00 2.08 0.08 100.0 SNORD62B-201 snoRNA HT-29 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 91.00 31.60 1.20 82.73 SNORD62B-201 snoRNA HT-29 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 27.00 9.38 0.36 100.0 SNORD62B-201 snoRNA HT-29 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 1.00 0.35 0.01 100.0 SNORD62B-201 snoRNA HT-29 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 5.00 1.74 0.07 100.0 SNORD62B-201 snoRNA HT-29 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 148.00 96.73 1.95 100.0 MRPL32-203 nonsense mediated decay HT-29 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 130.00 98.48 1.71 100.0 ENST00000436739 lncRNA HT-29 (Cell line)