ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387421.1 ENST00000387421.1_1_52_+ 1–52 340.00 14.74 4.48 100.0 MT-TK-201 Mt tRNA HT-29 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_28_+ 1–28 28.00 1.21 0.37 100.0 MT-TK-201 Mt tRNA HT-29 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_31_+ 1–31 4.00 0.17 0.05 100.0 MT-TK-201 Mt tRNA HT-29 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_58_+ 1–58 1080.00 46.81 14.24 100.0 MT-TK-201 Mt tRNA HT-29 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_26_+ 1–26 41.00 17.52 0.54 100.0 MT-TS2-201 Mt tRNA HT-29 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_53_+ 1–53 3.00 1.28 0.04 100.0 MT-TS2-201 Mt tRNA HT-29 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_20_+ 1–20 40.00 17.09 0.53 90.91 MT-TS2-201 Mt tRNA HT-29 (Cell line)
ENST00000387456.1 ENST00000387456.1_1_31_+ 1–31 23.00 9.66 0.30 100.0 MT-TL2-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 213.00 0.24 2.81 83.53 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 32.00 0.04 0.42 55.17 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 78.00 0.09 1.03 100.0 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 26.00 0.03 0.34 54.17 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 26.00 0.03 0.34 100.0 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 80696.00 89.83 1064.27 93.97 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 42.00 0.05 0.55 100.0 MT-TE-201 Mt tRNA HT-29 (Cell line)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 84.00 55.26 1.11 100.0 MIR196A1-201 miRNA HT-29 (Cell line)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 39.00 1.23 0.51 100.0 MT-RNR1-201 Mt rRNA HT-29 (Cell line)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 324.00 10.25 4.27 100.0 MT-RNR1-201 Mt rRNA HT-29 (Cell line)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 25.00 45.45 0.33 100.0 MIR454-201 miRNA HT-29 (Cell line)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 3.00 60.00 0.04 100.0 MIR501-201 miRNA HT-29 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 209.00 83.60 2.76 100.0 MIR769-201 miRNA HT-29 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 10.00 58.82 0.13 100.0 KRTAP19-1-201 protein coding HT-29 (Cell line)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 65.00 97.01 0.86 100.0 MIR301B-201 miRNA HT-29 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 84.00 51.53 1.11 82.35 RNU1-82P-201 snRNA HT-29 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 14.00 4.39 0.18 35.9 SNORD66-201 snoRNA HT-29 (Cell line)