ENCFF834CUR
Library Details
| Organism: | Homo Sapiens |
|---|---|
| Biosample: | HT-29 (Cell line) |
| GEO DB ID: | Not available |
| ENCODE Experiment ID: | ENCSR807KQN |
| Description: | Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning. |
|---|---|
| Author: | Thomas Gingeras, CSHL |
sncRNAs in this Library
| Precursor Transcript ID | sncRNA Name | sncRNA position in precursor | Expression | Expression Fraction | Expression (CPM) | Prominence | Transcript Name | Transcript Type | Biosample |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000386967.1 | ENST00000386967.1_2_70_+ | 2–70 | 1062.00 | 88.57 | 14.01 | 100.0 | SNORD41-201 | snoRNA | HT-29 (Cell line) |
| ENST00000387314.1 | ENST00000387314.1_1_54_+ | 1–54 | 2.00 | 1.39 | 0.03 | 100.0 | MT-TF-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387342.1 | ENST00000387342.1_1_53_+ | 1–53 | 154.00 | 16.14 | 2.03 | 100.0 | MT-TV-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1500_1559_+ | 1500–1559 | 18.00 | 0.40 | 0.24 | 100.0 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1357_1376_+ | 1357–1376 | 50.00 | 1.10 | 0.66 | 100.0 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1297_1329_+ | 1297–1329 | 3.00 | 0.07 | 0.04 | 100.0 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1500_1531_+ | 1500–1531 | 28.00 | 0.62 | 0.37 | 77.78 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1132_1147_+ | 1132–1147 | 53.00 | 1.17 | 0.70 | 100.0 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387347.2 | ENST00000387347.2_1500_1528_+ | 1500–1528 | 16.00 | 0.35 | 0.21 | 84.21 | MT-RNR2-201 | Mt rRNA | HT-29 (Cell line) |
| ENST00000387365.1 | ENST00000387365.1_1_51_+ | 1–51 | 127.00 | 12.21 | 1.67 | 89.44 | MT-TI-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387365.1 | ENST00000387365.1_1_58_+ | 1–58 | 237.00 | 22.79 | 3.13 | 100.0 | MT-TI-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_30_+ | 1–30 | 218.14 | 14.45 | 2.88 | 65.9 | MT-TQ-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_36_+ | 1–36 | 215.00 | 14.24 | 2.84 | 85.32 | MT-TQ-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_32_+ | 1–32 | 208.06 | 13.78 | 2.74 | 57.96 | MT-TQ-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387372.1 | ENST00000387372.1_1_55_+ | 1–55 | 11.00 | 0.73 | 0.15 | 100.0 | MT-TQ-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387377.1 | ENST00000387377.1_1_51_+ | 1–51 | 26.00 | 9.56 | 0.34 | 100.0 | MT-TM-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387377.1 | ENST00000387377.1_1_31_+ | 1–31 | 75.00 | 27.57 | 0.99 | 56.82 | MT-TM-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387405.1 | ENST00000387405.1_1_24_+ | 1–24 | 307.00 | 65.04 | 4.05 | 100.0 | MT-TC-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_28_+ | 1–28 | 67.00 | 0.39 | 0.88 | 100.0 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_32_+ | 1–32 | 200.00 | 1.15 | 2.64 | 93.9 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_56_+ | 1–56 | 19.00 | 0.11 | 0.25 | 100.0 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_37_+ | 1–37 | 29.00 | 0.17 | 0.38 | 70.73 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_50_+ | 1–50 | 4.00 | 0.02 | 0.05 | 100.0 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_65_+ | 1–65 | 16598.00 | 95.83 | 218.91 | 100.0 | MT-TY-201 | Mt tRNA | HT-29 (Cell line) |
| ENST00000387419.1 | ENST00000387419.1_1_51_+ | 1–51 | 3.00 | 18.75 | 0.04 | 100.0 | MT-TD-201 | Mt tRNA | HT-29 (Cell line) |