ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 48.00 78.69 0.63 100.0 MIR15B-201 miRNA HT-29 (Cell line)
ENST00000385048.3 ENST00000385048.3_16_37_+ 16–37 2.00 100.00 0.03 100.0 MIR150-201 miRNA HT-29 (Cell line)
ENST00000385051.1 ENST00000385051.1_51_71_+ 51–71 1.00 3.33 0.01 100.0 MIR500A-201 miRNA HT-29 (Cell line)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 26.00 86.67 0.34 100.0 MIR500A-201 miRNA HT-29 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_21_+ 6–21 1.00 1.52 0.01 100.0 MIR30A-201 miRNA HT-29 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 60.00 90.91 0.79 98.36 MIR30A-201 miRNA HT-29 (Cell line)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 4.00 6.06 0.05 100.0 MIR30A-201 miRNA HT-29 (Cell line)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 23.00 1.00 0.30 100.0 MIR27B-201 miRNA HT-29 (Cell line)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 2152.00 93.44 28.38 95.43 MIR27B-201 miRNA HT-29 (Cell line)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 108.00 84.38 1.42 100.0 MIR196A2-201 miRNA HT-29 (Cell line)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 306.00 93.87 4.04 100.0 MIR577-201 miRNA HT-29 (Cell line)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 1.00 100.00 0.01 100.0 MIR152-201 miRNA HT-29 (Cell line)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 80.00 93.02 1.06 100.0 MIR30C1-201 miRNA HT-29 (Cell line)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 5.00 83.33 0.07 100.0 MIR660-201 miRNA HT-29 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 3096.31 67.44 40.84 70.51 MIR182-201 miRNA HT-29 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 557.23 12.14 7.35 18.91 MIR182-201 miRNA HT-29 (Cell line)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 4.00 57.14 0.05 80.0 MIR100-201 miRNA HT-29 (Cell line)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 216.00 90.76 2.85 100.0 MIR301A-201 miRNA HT-29 (Cell line)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 4865.00 99.18 64.16 99.65 MIRLET7F2-201 miRNA HT-29 (Cell line)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 8.00 25.81 0.11 100.0 MIR652-201 miRNA HT-29 (Cell line)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 50.00 81.97 0.66 100.0 MIR140-201 miRNA HT-29 (Cell line)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 16.00 16.49 0.21 100.0 MIR106B-201 miRNA HT-29 (Cell line)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 29.00 29.90 0.38 70.73 MIR106B-201 miRNA HT-29 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 22501.00 77.96 296.76 98.62 SNORD83A-201 snoRNA HT-29 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 5027.00 17.42 66.30 94.76 SNORD83A-201 snoRNA HT-29 (Cell line)