ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 1959.00 67.11 8.34 100.0 ODAD3-204 nonsense mediated decay gastroesophageal sphincter (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 132.00 2.76 0.56 100.0 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 66.00 1.38 0.28 100.0 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 2879.00 60.17 12.26 69.78 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 158.00 0.07 0.67 100.0 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 175492.19 73.55 747.29 79.66 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 55995.45 23.47 238.44 24.15 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 3982.00 1.67 16.96 88.25 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 29.00 0.01 0.12 100.0 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 3.00 0.00 0.01 100.0 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 54.00 3.36 0.23 100.0 RPS11-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 1351.00 84.07 5.75 100.0 RPS11-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 3400261.00 88.66 14479.22 89.54 CARMN-209 lncRNA gastroesophageal sphincter (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 369.00 33.85 1.57 100.0 ENST00000602478 lncRNA gastroesophageal sphincter (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 264.00 59.06 1.12 100.0 PPFIA1P1-201 processed pseudogene gastroesophageal sphincter (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 287.00 10.46 1.22 100.0 SNORD114-21-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 2074.00 75.56 8.83 100.0 SNORD114-21-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 268.00 43.44 1.14 100.0 SNORD115-40-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 1746.00 96.78 7.43 100.0 MIR98-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 484.00 85.82 2.06 100.0 SNORD113-5-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 43.00 91.49 0.18 100.0 MIR15A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 5.00 100.00 0.02 100.0 MIR376C-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 170.00 53.29 0.72 100.0 SNHG21-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 380.00 76.61 1.62 100.0 SNORD11B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 4095.00 74.52 17.44 100.0 SNORD91B-201 snoRNA gastroesophageal sphincter (Tissue)