ENCFF811DGS

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR269YSX
Description: Part of ENCODE experiment ENCSR269YSX. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 74899.00 18.71 318.94 91.81 RPL23A-208 retained intron gastroesophageal sphincter (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 257.00 6.68 1.09 100.0 MIR133A1HG-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 2429.00 2.75 10.34 47.83 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 6508.00 7.37 27.71 44.86 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 356.00 0.40 1.52 100.0 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 49875.00 56.45 212.38 97.1 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 26449.00 29.94 112.63 98.35 RPL17-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 8.00 25.81 0.03 34.78 ENST00000582320 lncRNA gastroesophageal sphincter (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 3.00 9.68 0.01 100.0 ENST00000582320 lncRNA gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 701.00 8.64 2.99 100.0 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 1830.63 22.56 7.80 39.21 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 3462.50 42.68 14.74 59.96 RPL17-214 retained intron gastroesophageal sphincter (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 443873.00 99.36 1890.13 99.94 SNORD43-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 56.00 0.01 0.24 100.0 SNORD43-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 97.00 37.89 0.41 100.0 MIR151B-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 1.00 0.06 0.00 100.0 SNORD3A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 3658.00 74.24 15.58 100.0 SNORD92-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 4288.00 41.69 18.26 100.0 NSRP1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 4925.00 47.88 20.97 90.14 NSRP1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 637.00 5.41 2.71 100.0 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 3818.00 32.42 16.26 96.56 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 998.00 8.47 4.25 77.01 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 3160.00 26.83 13.46 91.25 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1587.00 13.48 6.76 78.14 MIR23AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 1.00 10.00 0.00 100.0 MIR122HG-201 lncRNA gastroesophageal sphincter (Tissue)