ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 79.00 90.80 0.53 100.0 HPS4-237 retained intron esophagus muscularis mucosa (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 39.00 92.86 0.26 100.0 MEG8-253 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 4.00 1.99 0.03 100.0 MEG9-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 7.00 3.48 0.05 100.0 MEG9-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 100.00 49.75 0.67 100.0 MEG9-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 919.00 13.57 6.12 100.0 DNAJC5-203 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 430.00 15.37 2.87 100.0 ENST00000707189 TEC esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 34253.71 62.59 228.26 70.33 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 3820.00 6.98 25.46 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 14537.25 26.56 96.87 31.72 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 29.00 0.05 0.19 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 238.00 0.43 1.59 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 151.00 0.28 1.01 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 40.00 0.07 0.27 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 43.00 0.08 0.29 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 6634.00 7.27 44.21 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 537.00 0.59 3.58 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 19.00 0.02 0.13 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 1116.00 1.22 7.44 76.54 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 81622.00 89.44 543.91 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 8173.00 89.55 54.46 98.89 SNHG32-227 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 394.00 4.32 2.63 100.0 SNHG32-227 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 6.00 0.07 0.04 100.0 SNHG32-227 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 4403.00 86.88 29.34 100.0 B4GALT1-203 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 533.00 6.91 3.55 100.0 ENST00000722183 lncRNA esophagus muscularis mucosa (Tissue)