ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 48.00 6.87 0.32 100.0 HCN2-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 1.00 4.76 0.01 100.0 SLC49A4-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 10.00 1.13 0.07 100.0 ATP5MC3-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 497.00 93.60 3.31 100.0 CDC25A-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 4809.00 92.07 32.05 100.0 RUNX3-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 44.00 4.60 0.29 100.0 BLOC1S4-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 309.00 14.86 2.06 100.0 ATAD5-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 285.00 34.01 1.90 100.0 SLITRK5-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 7.00 41.18 0.05 100.0 HASPIN-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 283.00 96.59 1.89 100.0 ATG101-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 7.00 25.93 0.05 100.0 PRICKLE1-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 1940.00 96.66 12.93 99.28 MIR133A2-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 16.00 28.57 0.11 100.0 PBLD-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 285187.00 91.07 1900.43 97.77 MIRLET7BHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 11591.00 3.70 77.24 79.19 MIRLET7BHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 1.00 0.59 0.01 100.0 MIR375-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 167.00 98.24 1.11 98.82 MIR375-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 7548.00 65.44 50.30 100.0 MIR30E-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 3448.00 29.89 22.98 100.0 MIR30E-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 132.00 38.60 0.88 100.0 MIR29A-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 55.00 83.33 0.37 100.0 MIR345-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 4466.00 98.67 29.76 100.0 MIR16-2-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 14.00 1.20 0.09 100.0 MIR340-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1123.00 96.15 7.48 100.0 MIR340-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 455.00 45.59 3.03 100.0 MIR107-201 miRNA esophagus muscularis mucosa (Tissue)