ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 61153.00 92.65 407.51 98.75 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 606.00 0.92 4.04 48.29 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 1167.00 1.77 7.78 94.26 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 6.00 0.01 0.04 100.0 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 5348.00 33.79 35.64 61.05 SNHG14-336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 9702.00 61.31 64.65 90.77 SNHG14-336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 9862.00 88.31 65.72 98.06 SNHG14-341 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 172.00 11.65 1.15 100.0 NCL-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 390.00 52.00 2.60 100.0 FMN2-209 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 400.00 7.69 2.67 57.64 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 294.00 5.65 1.96 42.36 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 18.00 0.35 0.12 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 518.00 9.96 3.45 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 139.00 2.67 0.93 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 312.00 6.00 2.08 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 280.00 26.59 1.87 100.0 SNHG10-212 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 5.59 0.03 0.04 93.24 SNHG19-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 6226.41 32.03 41.49 33.47 SNHG19-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 12307.82 63.32 82.02 76.63 SNHG19-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2185.00 82.02 14.56 100.0 MIR222HG-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 189.00 7.09 1.26 65.4 MIR222HG-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 16.00 0.60 0.11 100.0 MIR222HG-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 18.00 15.52 0.12 100.0 RPSA-216 retained intron esophagus muscularis mucosa (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 2243.00 10.25 14.95 86.57 MIR99AHG-370 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 18275.00 83.49 121.78 97.25 MIR99AHG-370 lncRNA esophagus muscularis mucosa (Tissue)