ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 142.00 12.85 0.95 100.0 SCARNA4-202 scaRNA esophagus muscularis mucosa (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 493.00 61.24 3.29 100.0 ENST00000625572 miRNA esophagus muscularis mucosa (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 6764.00 94.92 45.07 100.0 ENST00000628177 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 382.00 80.25 2.55 100.0 ENST00000630615 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 742.00 71.07 4.94 100.0 DMRT2-209 protein coding esophagus muscularis mucosa (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 37.00 3.54 0.25 100.0 DMRT2-209 protein coding esophagus muscularis mucosa (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 824.00 58.73 5.49 100.0 SNORD98-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 267.00 19.03 1.78 100.0 SNORD98-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 33993.88 69.08 226.53 71.84 MIR106AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 4.33 0.01 0.03 20.61 MIR106AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 6.00 0.01 0.04 100.0 MIR106AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 14.48 0.03 0.10 68.97 MIR106AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 687.00 80.26 4.58 100.0 MEG8-222 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 62.00 7.24 0.41 100.0 MEG8-222 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 3733.00 13.04 24.88 97.75 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 12036.00 42.05 80.21 96.19 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 4880.00 17.05 32.52 100.0 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 3219.00 11.25 21.45 94.48 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 188.00 0.66 1.25 100.0 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 303.00 1.06 2.02 47.12 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 298.00 1.04 1.99 81.87 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 191.00 0.67 1.27 64.53 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 12749.77 6.78 84.96 43.52 5S_rRNA.20-201 rRNA pseudogene esophagus muscularis mucosa (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 165.00 6.75 1.10 100.0 HSPA9-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 856.00 35.04 5.70 58.75 HSPA9-211 retained intron esophagus muscularis mucosa (Tissue)