ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 61.00 0.33 0.41 100.0 VMP1-217 retained intron esophagus muscularis mucosa (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 12615.00 68.66 84.06 77.54 VMP1-217 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 223.00 0.10 1.49 100.0 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 162125.13 71.02 1080.37 76.75 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 54990.50 24.09 366.45 24.71 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 3442.00 1.51 22.94 93.08 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 39.00 0.02 0.26 100.0 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 33.00 7.21 0.22 100.0 RPS11-206 retained intron esophagus muscularis mucosa (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 341.00 74.45 2.27 100.0 RPS11-206 retained intron esophagus muscularis mucosa (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 6484602.00 73.44 43212.01 74.92 CARMN-209 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 450.00 48.44 3.00 100.0 ENST00000602478 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 564.00 56.63 3.76 100.0 PPFIA1P1-201 processed pseudogene esophagus muscularis mucosa (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 268.00 22.45 1.79 100.0 SNORD114-21-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 696.00 58.29 4.64 100.0 SNORD114-21-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 439.00 49.38 2.93 100.0 SNORD115-40-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 5065.00 96.62 33.75 100.0 MIR98-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 582.00 92.38 3.88 100.0 SNORD113-5-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 109.00 81.95 0.73 100.0 MIR15A-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 480.00 59.70 3.20 100.0 SNHG21-206 retained intron esophagus muscularis mucosa (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 57.00 65.52 0.38 100.0 SNORD11B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 1201.00 55.42 8.00 100.0 SNORD91B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 3987.00 30.44 26.57 33.74 SNORD91A-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 196618.00 48.92 1310.22 98.5 MIR486-1-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 14182.00 52.33 94.51 62.23 NOP56-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 84.00 0.31 0.56 100.0 NOP56-219 retained intron esophagus muscularis mucosa (Tissue)