ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 1982.00 3.80 13.21 68.02 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 6874.00 13.18 45.81 54.45 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 867.00 1.66 5.78 100.0 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 33460.00 64.14 222.97 95.71 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 5445.00 10.44 36.28 93.46 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 58.00 21.17 0.39 30.53 ENST00000582320 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 24.00 8.76 0.16 100.0 ENST00000582320 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 8.00 2.92 0.05 100.0 ENST00000582320 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 652.00 5.35 4.34 100.0 RPL17-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 6043.79 49.58 40.27 58.75 RPL17-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 4622.68 37.93 30.80 42.5 RPL17-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 155323.00 98.27 1035.04 99.94 SNORD43-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 41.00 0.03 0.27 100.0 SNORD43-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 60.00 26.32 0.40 100.0 MIR151B-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 14.00 0.44 0.09 100.0 SNORD3A-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 1411.00 59.29 9.40 100.0 SNORD92-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1720.00 26.97 11.46 100.0 NSRP1-214 protein coding esophagus muscularis mucosa (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3575.00 56.05 23.82 86.29 NSRP1-214 protein coding esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 254.00 3.38 1.69 100.0 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2082.00 27.69 13.87 97.56 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1729.00 23.00 11.52 81.94 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1816.00 24.15 12.10 96.8 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 445.00 5.92 2.97 69.42 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 8.00 16.67 0.05 100.0 ODAD3-204 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 697.00 3.79 4.64 100.0 VMP1-217 retained intron esophagus muscularis mucosa (Tissue)