ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2034.00 0.45 13.55 100.0 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 286713.00 63.03 1910.59 64.74 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 109.00 12.44 0.73 100.0 RPL4-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 428.00 48.86 2.85 100.0 RPL4-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 6391.07 25.95 42.59 47.95 POLG-DT-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 8040.40 32.65 53.58 72.4 POLG-DT-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 865.00 3.51 5.76 100.0 POLG-DT-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 83.00 4.57 0.55 100.0 ENST00000570843 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 906.00 67.97 6.04 100.0 MIR497HG-207 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 16245.00 95.18 108.25 97.41 MIR22HG-212 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 346.00 2.61 2.31 67.32 SNORD53B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 11990.00 90.32 79.90 95.08 SNORD53B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 168.00 1.27 1.12 32.68 SNORD53B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 52.00 54.17 0.35 100.0 ENST00000578036 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 303.00 82.56 2.02 100.0 RPL23A-207 protein coding esophagus muscularis mucosa (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 516.00 92.97 3.44 100.0 MIR744-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 122.00 59.22 0.81 100.0 MIR378C-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 427.00 80.11 2.85 85.23 MIR142HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 1.00 0.19 0.01 100.0 MIR142HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 13.00 2.44 0.09 9.49 MIR142HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 271.86 0.05 1.81 65.04 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 178.33 0.03 1.19 51.54 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 451592.00 87.22 3009.31 92.39 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 62873.00 12.14 418.97 91.4 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 31.00 1.51 0.21 100.0 MIR133A1HG-202 lncRNA esophagus muscularis mucosa (Tissue)