ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 193.00 1.04 1.29 100.0 TAF1D-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 3.00 0.78 0.02 100.0 HSPA8-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 281.00 72.80 1.87 100.0 HSPA8-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 71.00 17.23 0.47 100.0 RPS2-215 retained intron esophagus muscularis mucosa (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 358049.00 79.14 2385.96 81.05 ENST00000548801 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 136.00 12.20 0.91 100.0 ENST00000554988 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 213.00 19.10 1.42 100.0 ENST00000554988 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 52.00 4.66 0.35 100.0 ENST00000554988 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 3565.00 16.20 23.76 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 501.00 2.28 3.34 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 16800.00 76.33 111.95 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 167.00 0.76 1.11 100.0 SNHG14-220 retained intron esophagus muscularis mucosa (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 7094.00 99.58 47.27 100.0 TEKT4P2-201 transcribed unprocessed pseudogene esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 682.00 2.95 4.54 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 19225.00 83.06 128.11 94.31 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 307.00 1.33 2.05 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 46.00 0.20 0.31 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 6.00 0.03 0.04 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 216.00 1.30 1.44 100.0 ENST00000563103 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 804.00 16.20 5.36 100.0 RPL4-207 retained intron esophagus muscularis mucosa (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 1621.00 32.66 10.80 100.0 RPL4-207 retained intron esophagus muscularis mucosa (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 5082.00 23.51 33.87 68.91 ENST00000565336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 12089.00 55.92 80.56 91.28 ENST00000565336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 470.00 0.10 3.13 100.0 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 2050.00 0.45 13.66 100.0 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)