ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 357.00 0.17 2.38 38.47 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 207.00 0.10 1.38 100.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2.00 0.00 0.01 100.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 571.00 0.27 3.81 61.53 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1480.00 0.70 9.86 100.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 183666.00 87.24 1223.91 94.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2141.00 1.02 14.27 100.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 351.00 18.91 2.34 100.0 GNL3-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 1271.00 68.48 8.47 100.0 GNL3-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 124.00 12.47 0.83 100.0 RPL5-205 retained intron esophagus muscularis mucosa (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 625.00 62.88 4.16 100.0 RPL5-205 retained intron esophagus muscularis mucosa (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 32.00 0.42 0.21 100.0 ZBED9-AS1-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1034.00 92.24 6.89 100.0 RPS3A-206 retained intron esophagus muscularis mucosa (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 9401.00 95.11 62.65 100.0 COX7C-203 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 2071.00 6.20 13.80 100.0 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 14166.00 42.42 94.40 99.8 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 3668.23 10.99 24.44 35.38 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 10055.46 30.11 67.01 75.45 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 28942.00 75.29 192.86 93.75 RACK1-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 7597.00 19.76 50.62 61.18 RACK1-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 231.00 2.03 1.54 100.0 RNA5SP486-201 rRNA pseudogene esophagus muscularis mucosa (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1570.00 89.92 10.46 100.0 SCARNA5-201 scaRNA esophagus muscularis mucosa (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 5807.00 4.65 38.70 82.08 RNY4-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 99.00 0.08 0.66 100.0 RNY4-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 440.00 0.35 2.93 50.29 RNY4-201 misc RNA esophagus muscularis mucosa (Tissue)