ENCFF797VVQ

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR233DGJ
Description: Part of ENCODE experiment ENCSR233DGJ. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 108.00 21.22 0.72 100.0 RPL7A-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 29.00 5.70 0.19 100.0 RPL7A-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 195.00 38.31 1.30 100.0 RPL7A-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 337.00 0.09 2.25 100.0 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 7.00 0.00 0.05 100.0 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 161864.00 44.18 1078.63 99.6 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 197323.00 53.85 1314.92 96.05 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 3133.00 0.86 20.88 100.0 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 18.00 29.51 0.12 100.0 GABRE-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 75.00 0.23 0.50 71.43 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 21361.00 66.03 142.35 99.73 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 35.00 0.11 0.23 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 27.00 0.08 0.18 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 6081.00 18.80 40.52 81.35 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 157.00 0.49 1.05 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 46.00 0.14 0.31 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 772.00 29.42 5.14 65.76 RPL7A-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 145.00 5.53 0.97 100.0 RPL7A-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 271.00 10.33 1.81 100.0 RPL7A-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 105.00 1.66 0.70 4.83 RN7SL2-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 33.00 0.52 0.22 100.0 RN7SL2-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1003.00 89.87 6.68 100.0 RGS11-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 5977.00 8.34 39.83 92.52 NOP56-217 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 52871.00 73.81 352.32 83.49 NOP56-217 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 207.00 0.10 1.38 100.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)