ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 1268.00 89.74 3.89 100.0 MEG8-225 lncRNA gastroesophageal sphincter (Tissue)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 73044.00 91.49 223.87 100.0 SNHG29-232 lncRNA gastroesophageal sphincter (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 672.00 0.84 2.06 100.0 SNHG29-232 lncRNA gastroesophageal sphincter (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 310.00 0.39 0.95 100.0 SNHG29-232 lncRNA gastroesophageal sphincter (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 676.00 0.85 2.07 100.0 SNHG29-232 lncRNA gastroesophageal sphincter (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 4130.00 5.17 12.66 100.0 SNHG29-232 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 227.00 0.88 0.70 100.0 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 9353.00 36.14 28.67 95.68 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 8.00 0.03 0.02 100.0 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 3094.00 11.95 9.48 100.0 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 1985.00 7.67 6.08 100.0 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 4437.00 17.14 13.60 87.69 SNHG14-234 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 351.00 2.61 1.08 8.98 ENST00000655317 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 341.00 2.53 1.05 100.0 ENST00000655317 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 8673.00 64.45 26.58 96.05 ENST00000655317 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 1226.00 9.11 3.76 100.0 ENST00000655317 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 179.00 0.95 0.55 75.21 LINC01962-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 14090.00 74.56 43.18 100.0 LINC01962-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 600.00 3.17 1.84 100.0 LINC01962-202 lncRNA gastroesophageal sphincter (Tissue)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 3066.00 24.90 9.40 92.74 SNHG14-241 lncRNA gastroesophageal sphincter (Tissue)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 7232.00 86.77 22.17 100.0 MEG8-228 lncRNA gastroesophageal sphincter (Tissue)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 1466.00 32.59 4.49 100.0 SNHG14-254 lncRNA gastroesophageal sphincter (Tissue)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 1620.00 21.27 4.97 100.0 SNHG14-261 lncRNA gastroesophageal sphincter (Tissue)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 2685.00 35.25 8.23 91.73 SNHG14-261 lncRNA gastroesophageal sphincter (Tissue)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 50.00 0.47 0.15 100.0 LIMD1-AS1-204 lncRNA gastroesophageal sphincter (Tissue)