ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 205.00 0.26 0.63 100.0 NOP56-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 329.00 0.41 1.01 100.0 NOP56-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 3966.00 4.99 12.16 74.87 NOP56-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 1045.00 3.58 3.20 55.73 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 10459.48 35.82 32.06 49.85 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 46.00 0.16 0.14 100.0 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 632.00 2.16 1.94 100.0 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 20.00 0.07 0.06 100.0 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1307.00 4.48 4.01 55.57 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 11237.24 38.49 34.44 53.56 RNA5-8SN2-201 rRNA gastroesophageal sphincter (Tissue)
ENST00000616574.2 ENST00000616574.2_7_27_+ 7–27 1.00 100.00 0.00 100.0 MIR376A1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 215.00 1.14 0.66 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 543.60 2.89 1.67 32.45 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 167.00 0.89 0.51 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 5.00 0.03 0.02 27.78 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 9.00 0.05 0.03 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 1103.80 5.87 3.38 65.9 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 6962.00 37.05 21.34 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 309.00 1.64 0.95 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 148.00 0.79 0.45 100.0 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 11.30 0.06 0.03 70.63 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 2.33 0.01 0.01 14.56 U2.3-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 666.00 6.80 2.04 100.0 U2.6-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 91.00 0.66 0.28 26.69 ENST00000619323 lncRNA gastroesophageal sphincter (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 12999.00 93.65 39.84 97.22 ENST00000619323 lncRNA gastroesophageal sphincter (Tissue)