ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 271.00 3.97 0.83 100.0 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 100.00 1.46 0.31 100.0 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 4342.00 63.56 13.31 73.56 VMP1-217 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 174.00 0.06 0.53 100.0 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 188766.95 64.99 578.56 71.1 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 89919.12 30.96 275.60 31.86 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 4855.00 1.67 14.88 89.86 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 36.00 0.01 0.11 100.0 C19orf48P-203 retained intron gastroesophageal sphincter (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 402.00 17.33 1.23 100.0 RPS11-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 1615.00 69.61 4.95 100.0 RPS11-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 5278515.00 88.47 16178.25 89.26 CARMN-209 lncRNA gastroesophageal sphincter (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 242.00 34.87 0.74 100.0 ENST00000602478 lncRNA gastroesophageal sphincter (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 232.00 50.22 0.71 100.0 PPFIA1P1-201 processed pseudogene gastroesophageal sphincter (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 325.00 14.85 1.00 100.0 SNORD114-21-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 1560.00 71.30 4.78 100.0 SNORD114-21-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 510.00 43.40 1.56 100.0 SNORD115-40-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 1881.00 95.97 5.77 100.0 MIR98-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 1115.00 88.63 3.42 100.0 SNORD113-5-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 97.00 80.83 0.30 100.0 MIR15A-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 159.00 44.92 0.49 100.0 SNHG21-206 retained intron gastroesophageal sphincter (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 8130.00 94.58 24.92 100.0 SNORD11B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 3213.00 69.46 9.85 100.0 SNORD91B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 6458.00 51.69 19.79 59.2 SNORD91A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 116968.00 48.09 358.50 97.3 MIR486-1-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 42301.00 53.17 129.65 59.86 NOP56-219 retained intron gastroesophageal sphincter (Tissue)