ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 147.00 21.27 0.45 100.0 SCARNA4-202 scaRNA gastroesophageal sphincter (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 1798.00 47.42 5.51 100.0 ENST00000625572 miRNA gastroesophageal sphincter (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 4134.00 90.84 12.67 100.0 ENST00000628177 snoRNA gastroesophageal sphincter (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 1623.00 96.38 4.97 100.0 ENST00000630615 snoRNA gastroesophageal sphincter (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 702.00 70.48 2.15 100.0 DMRT2-209 protein coding gastroesophageal sphincter (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 48.00 4.82 0.15 100.0 DMRT2-209 protein coding gastroesophageal sphincter (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 208.00 25.62 0.64 100.0 SNORD98-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 420.00 51.72 1.29 100.0 SNORD98-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 36488.19 59.60 111.83 61.38 MIR106AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 7.79 0.01 0.02 24.34 MIR106AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 2.00 0.00 0.01 100.0 MIR106AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 24.71 0.04 0.08 77.21 MIR106AHG-201 lncRNA gastroesophageal sphincter (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 219.00 15.19 0.67 100.0 MEG8-222 lncRNA gastroesophageal sphincter (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 602.00 41.75 1.85 100.0 MEG8-222 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 4415.00 8.23 13.53 98.37 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 23467.00 43.77 71.92 91.43 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 7554.00 14.09 23.15 100.0 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 7332.00 13.67 22.47 88.15 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 85.00 0.16 0.26 100.0 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 381.00 0.71 1.17 42.67 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 1481.00 2.76 4.54 70.49 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 1106.00 2.06 3.39 65.91 SNHG14-224 lncRNA gastroesophageal sphincter (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 1438.60 7.10 4.41 47.37 5S_rRNA.20-201 rRNA pseudogene gastroesophageal sphincter (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 96.00 1.97 0.29 100.0 HSPA9-211 retained intron gastroesophageal sphincter (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 1649.00 33.92 5.05 55.04 HSPA9-211 retained intron gastroesophageal sphincter (Tissue)