ENCFF744HOK

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR998CRC
Description: Part of ENCODE experiment ENCSR998CRC. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 15661.00 95.60 48.00 97.73 SNORD124-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 369.00 24.42 1.13 100.0 SNHG12-201 retained intron gastroesophageal sphincter (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 932.00 7.32 2.86 18.21 RPL3-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 6477.00 50.86 19.85 100.0 RPL3-212 retained intron gastroesophageal sphincter (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3800.00 95.84 11.65 100.0 SMC1A-204 retained intron gastroesophageal sphincter (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 42250.00 89.45 129.49 97.21 RABGGTB-208 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 372.00 3.21 1.14 100.0 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 903.00 7.79 2.77 100.0 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 6776.00 58.46 20.77 80.0 DDX39B-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1447.00 78.30 4.43 100.0 RPS8-206 protein coding CDS not defined gastroesophageal sphincter (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 783454.00 98.38 2401.23 99.48 RPL13-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 3580.00 0.45 10.97 100.0 RPL13-207 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 231.00 0.10 0.71 53.72 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 3518.00 1.60 10.78 89.15 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 464.00 0.21 1.42 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 145443.00 66.10 445.77 98.33 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 967.00 0.44 2.96 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 749.00 0.34 2.30 22.83 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 129.00 0.06 0.40 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 5.00 0.00 0.02 100.0 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 8797.00 4.00 26.96 65.55 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 42958.00 19.52 131.66 84.27 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 421.00 0.19 1.29 57.44 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 1071.00 0.49 3.28 43.52 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 90.00 0.04 0.28 33.33 EIF4A2-219 retained intron gastroesophageal sphincter (Tissue)