ENCFF714LDG

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 4335.00 1.37 28.72 100.0 VMP1-217 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 23.00 0.01 0.15 100.0 VMP1-217 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 4360.00 27.26 28.88 100.0 C19orf48P-203 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 215.05 1.34 1.42 77.35 C19orf48P-203 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 201.51 1.26 1.33 55.82 C19orf48P-203 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 3579.00 22.38 23.71 100.0 C19orf48P-203 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 7389.00 85.92 48.95 100.0 ENST00000597420 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 16578.00 72.08 109.82 73.3 CARMN-209 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 33.00 31.13 0.22 100.0 PPFIA1P1-201 processed pseudogene trophoblast cell (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 4.00 80.00 0.03 100.0 SNORD114-21-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 60.00 63.83 0.40 100.0 MIR98-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 2029.00 92.40 13.44 100.0 MIR15A-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 1.00 50.00 0.01 100.0 MIR376C-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 2315.00 59.96 15.34 100.0 SNHG21-206 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 1.00 0.21 0.01 100.0 SNORD91B-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 98.00 46.45 0.65 100.0 MIR219A2HG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 7.00 0.62 0.05 87.5 SNORD91A-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 1216.00 47.50 8.06 97.67 MIR486-1-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 522.00 5.26 3.46 100.0 NOP56-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 6205.00 62.47 41.10 100.0 NOP56-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 36.00 0.36 0.24 100.0 NOP56-219 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 7.00 0.01 0.05 70.0 RNA5-8SN2-201 rRNA trophoblast cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 2885.35 5.88 19.11 54.45 RNA5-8SN2-201 rRNA trophoblast cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 1094.00 2.23 7.25 100.0 RNA5-8SN2-201 rRNA trophoblast cell (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 3845.00 7.83 25.47 100.0 RNA5-8SN2-201 rRNA trophoblast cell (In vitro differentiated cells)