ENCFF714LDG

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 5.00 0.09 0.03 15.62 RPL17-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 5.00 0.09 0.03 3.5 RPL17-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 1399.00 25.05 9.27 99.71 RPL17-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 237.00 4.24 1.57 100.0 RPL17-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 5.00 0.09 0.03 100.0 RPL17-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 6.00 9.52 0.04 75.0 ENST00000582320 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 43.00 68.25 0.28 100.0 ENST00000582320 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 4.00 6.35 0.03 100.0 ENST00000582320 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 229.00 7.38 1.52 100.0 RPL17-214 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 259.58 8.37 1.72 35.46 RPL17-214 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 560.09 18.06 3.71 66.44 RPL17-214 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 5353.00 9.77 35.46 100.0 SNORD43-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 39614.00 72.30 262.41 99.85 SNORD43-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 1221.00 2.23 8.09 100.0 SNORD43-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 2177.00 90.82 14.42 100.0 MIR151B-201 miRNA trophoblast cell (In vitro differentiated cells)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 1.00 0.19 0.01 100.0 SNORD92-201 snoRNA trophoblast cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 46711.00 69.15 309.42 100.0 NSRP1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 15525.00 22.98 102.84 91.64 NSRP1-214 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 1.00 0.00 0.01 100.0 MIR23AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 3968.00 16.74 26.28 56.89 MIR23AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 9242.00 38.98 61.22 95.65 MIR23AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1060.00 4.47 7.02 52.04 MIR23AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1713.00 7.23 11.35 79.01 MIR23AHG-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 28.00 22.05 0.19 100.0 ODAD3-204 nonsense mediated decay trophoblast cell (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 252043.00 79.50 1669.59 82.37 VMP1-217 retained intron trophoblast cell (In vitro differentiated cells)