ENCFF714LDG

Library Details

Organism: Homo Sapiens
Biosample: trophoblast cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR083HYC
Description: Part of ENCODE experiment ENCSR083HYC.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 1.00 0.01 0.01 100.0 WDR74-204 protein coding trophoblast cell (In vitro differentiated cells)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 4.00 0.46 0.03 100.0 HSPA8-211 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 208.00 2.86 1.38 100.0 SCARNA9-201 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 2.00 0.04 0.01 100.0 TAF1D-215 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 575.00 11.41 3.81 100.0 TAF1D-215 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 6.00 1.44 0.04 100.0 HSPA8-215 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 2.00 0.17 0.01 100.0 RPS2-215 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 573662.00 89.19 3800.06 90.15 ENST00000548801 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 124.00 7.45 0.82 100.0 ENST00000554988 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 110.00 6.61 0.73 100.0 ENST00000554988 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 999.00 13.27 6.62 100.0 SNHG14-220 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 5.00 0.07 0.03 100.0 SNHG14-220 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 602.00 8.00 3.99 100.0 SNHG14-220 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 5.00 0.07 0.03 100.0 SNHG14-220 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 206.00 98.10 1.36 100.0 TEKT4P2-201 transcribed unprocessed pseudogene trophoblast cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1891.00 33.10 12.53 100.0 RPL4-202 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 11.00 0.19 0.07 100.0 RPL4-202 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 523.00 9.15 3.46 100.0 RPL4-202 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 841.00 14.72 5.57 100.0 RPL4-202 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 151.00 2.64 1.00 94.38 RPL4-202 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 8145.00 14.49 53.95 100.0 ENST00000563103 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 42.00 0.43 0.28 100.0 RPL4-207 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 92.00 0.93 0.61 100.0 RPL4-207 retained intron trophoblast cell (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 169.00 5.50 1.12 97.69 ENST00000565336 lncRNA trophoblast cell (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 938.00 30.50 6.21 97.71 ENST00000565336 lncRNA trophoblast cell (In vitro differentiated cells)