ENCFF694VGD

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR996VHB
Description: Part of ENCODE experiment ENCSR996VHB. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 1381.00 32.34 7.77 100.0 SNHG10-212 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 8399.00 59.13 47.25 100.0 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 3150.00 22.18 17.72 73.19 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 47.00 0.33 0.26 100.0 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 10437.00 77.83 58.71 100.0 RPSA-216 retained intron upper lobe of left lung (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 2526.00 10.50 14.21 88.97 MIR99AHG-370 lncRNA upper lobe of left lung (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 20046.00 83.30 112.76 97.75 MIR99AHG-370 lncRNA upper lobe of left lung (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 148.00 93.08 0.83 100.0 HPS4-237 retained intron upper lobe of left lung (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 18.00 69.23 0.10 100.0 MEG8-253 lncRNA upper lobe of left lung (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 3.00 3.61 0.02 100.0 MEG9-206 lncRNA upper lobe of left lung (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 4.00 4.82 0.02 100.0 MEG9-206 lncRNA upper lobe of left lung (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 30.00 36.14 0.17 100.0 MEG9-206 lncRNA upper lobe of left lung (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 3536.00 11.72 19.89 100.0 DNAJC5-203 nonsense mediated decay upper lobe of left lung (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 5484.00 47.29 30.85 100.0 ENST00000707189 TEC upper lobe of left lung (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 347.00 0.25 1.95 100.0 MIR17HG-214 lncRNA upper lobe of left lung (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 8.00 0.01 0.05 100.0 MIR17HG-214 lncRNA upper lobe of left lung (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 87441.06 64.14 491.88 68.82 MIR17HG-214 lncRNA upper lobe of left lung (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 2850.00 2.09 16.03 100.0 MIR17HG-214 lncRNA upper lobe of left lung (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 261.00 0.19 1.47 100.0 MIR17HG-214 lncRNA upper lobe of left lung (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 149.00 0.11 0.84 100.0 MIR17HG-214 lncRNA upper lobe of left lung (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 43775.60 32.11 246.25 36.44 MIR17HG-214 lncRNA upper lobe of left lung (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 237.00 0.17 1.33 100.0 MIR17HG-214 lncRNA upper lobe of left lung (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 5435.00 2.32 30.57 78.99 SNHG32-223 lncRNA upper lobe of left lung (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 9587.00 4.09 53.93 100.0 SNHG32-223 lncRNA upper lobe of left lung (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 390.00 0.17 2.19 100.0 SNHG32-223 lncRNA upper lobe of left lung (Tissue)