ENCFF694VGD

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR996VHB
Description: Part of ENCODE experiment ENCSR996VHB. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 958.93 0.25 5.39 32.85 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 1749.00 0.45 9.84 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 632.00 0.16 3.56 57.09 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 2782.00 0.72 15.65 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 27.00 0.01 0.15 100.0 SNHG1-248 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 765.00 3.02 4.30 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 99.39 0.39 0.56 91.18 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 32.00 0.13 0.18 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 47.00 0.19 0.26 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 1.89 0.01 0.01 1.73 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 18535.00 73.28 104.26 99.87 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 181.00 0.72 1.02 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1153.00 4.56 6.49 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 141.00 0.56 0.79 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 135.00 0.94 0.76 58.7 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 13585.00 94.70 76.42 98.51 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 106.00 0.74 0.60 44.54 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 16.00 0.11 0.09 80.0 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 274.00 23.85 1.54 100.0 FMN2-209 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 5.00 0.04 0.03 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 116.00 0.87 0.65 23.06 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 336.00 2.51 1.89 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 5658.00 42.34 31.83 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 170.00 1.27 0.96 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 387.00 2.90 2.18 76.94 LINC02739-203 lncRNA upper lobe of left lung (Tissue)