ENCFF694VGD

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR996VHB
Description: Part of ENCODE experiment ENCSR996VHB. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 60.00 0.03 0.34 100.0 SNHG32-223 lncRNA upper lobe of left lung (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 215380.00 91.85 1211.56 100.0 SNHG32-223 lncRNA upper lobe of left lung (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 22293.00 86.46 125.40 99.5 SNHG32-227 lncRNA upper lobe of left lung (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 1948.00 7.56 10.96 100.0 SNHG32-227 lncRNA upper lobe of left lung (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 28.00 0.11 0.16 100.0 SNHG32-227 lncRNA upper lobe of left lung (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 580.00 81.12 3.26 100.0 B4GALT1-203 nonsense mediated decay upper lobe of left lung (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 482.00 2.90 2.71 100.0 ENST00000722183 lncRNA upper lobe of left lung (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 4769.00 28.72 26.83 87.25 ENST00000722183 lncRNA upper lobe of left lung (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 633.00 3.81 3.56 100.0 ENST00000722183 lncRNA upper lobe of left lung (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 808.00 35.55 4.55 100.0 MIR34BHG-202 lncRNA upper lobe of left lung (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 14578.00 63.63 82.00 69.77 THBS3-AS1-228 lncRNA upper lobe of left lung (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 11019.00 74.71 61.98 100.0 MIR200CHG-202 lncRNA upper lobe of left lung (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 1075.00 7.29 6.05 100.0 MIR200CHG-202 lncRNA upper lobe of left lung (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 156.00 1.98 0.88 100.0 SNHG16-266 lncRNA upper lobe of left lung (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 3308.00 42.09 18.61 100.0 SNHG16-266 lncRNA upper lobe of left lung (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 637.00 8.10 3.58 100.0 SNHG16-266 lncRNA upper lobe of left lung (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 4.00 100.00 0.02 100.0 MEG8-261 lncRNA upper lobe of left lung (Tissue)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 62.00 23.40 0.35 100.0 NR2F2-AS1-327 lncRNA upper lobe of left lung (Tissue)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 614.00 1.36 3.45 47.45 ENST00000747675 lncRNA upper lobe of left lung (Tissue)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 37544.00 83.36 211.19 100.0 ENST00000747675 lncRNA upper lobe of left lung (Tissue)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 371.00 0.82 2.09 37.66 ENST00000747675 lncRNA upper lobe of left lung (Tissue)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 309.00 0.69 1.74 33.48 ENST00000747675 lncRNA upper lobe of left lung (Tissue)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 1199.00 2.66 6.74 100.0 ENST00000747675 lncRNA upper lobe of left lung (Tissue)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 23342.00 58.96 131.30 68.11 SNHG26-250 lncRNA upper lobe of left lung (Tissue)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 625.00 1.58 3.52 100.0 SNHG26-250 lncRNA upper lobe of left lung (Tissue)