ENCFF694VGD

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR996VHB
Description: Part of ENCODE experiment ENCSR996VHB. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 4092.00 29.25 23.02 92.43 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1815.00 12.97 10.21 76.29 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 18.00 8.96 0.10 100.0 ODAD3-204 nonsense mediated decay upper lobe of left lung (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 8204.00 4.95 46.15 100.0 VMP1-217 retained intron upper lobe of left lung (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 112.00 0.07 0.63 100.0 VMP1-217 retained intron upper lobe of left lung (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 101667.00 61.36 571.90 69.47 VMP1-217 retained intron upper lobe of left lung (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 646.00 34.16 3.63 100.0 C19orf48P-203 retained intron upper lobe of left lung (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 43.00 2.27 0.24 100.0 C19orf48P-203 retained intron upper lobe of left lung (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1853064.00 80.15 10423.91 81.5 CARMN-209 lncRNA upper lobe of left lung (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 2838.00 47.55 15.96 100.0 PPFIA1P1-201 processed pseudogene upper lobe of left lung (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 170.00 63.20 0.96 100.0 SNORD114-21-201 snoRNA upper lobe of left lung (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 57.00 21.19 0.32 100.0 SNORD114-21-201 snoRNA upper lobe of left lung (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 10259.00 97.28 57.71 100.0 MIR98-201 miRNA upper lobe of left lung (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 803.00 93.59 4.52 100.0 MIR15A-201 miRNA upper lobe of left lung (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 2.00 100.00 0.01 100.0 MIR376C-201 miRNA upper lobe of left lung (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 1160.00 56.75 6.53 100.0 SNHG21-206 retained intron upper lobe of left lung (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 356491.00 48.72 2005.34 98.17 MIR486-1-201 miRNA upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 16506.00 76.23 92.85 99.92 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 139.00 0.64 0.78 100.0 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 2318.00 10.71 13.04 100.0 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 493.00 2.28 2.77 59.61 NOP56-219 retained intron upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 2569.31 21.47 14.45 32.22 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 26.00 0.22 0.15 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 783.00 6.54 4.40 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 32.00 0.27 0.18 100.0 RNA5-8SN2-201 rRNA upper lobe of left lung (Tissue)