ENCFF694VGD

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR996VHB
Description: Part of ENCODE experiment ENCSR996VHB. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 635.00 4.73 3.57 16.03 MIR142HG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 84.80 0.02 0.48 58.89 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 59.19 0.02 0.33 54.31 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 313054.00 85.17 1761.00 89.88 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 52573.00 14.30 295.74 89.55 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 6.00 4.38 0.03 100.0 MIR133A1HG-202 lncRNA upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 588.00 2.71 3.31 60.25 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 1107.00 5.10 6.23 25.09 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 135.00 0.62 0.76 100.0 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 13372.00 61.66 75.22 97.65 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 1877.00 8.66 10.56 94.23 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 1210.00 33.31 6.81 38.81 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 71.00 1.95 0.40 100.0 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 44.00 1.21 0.25 100.0 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 4225.00 38.24 23.77 100.0 RPL17-214 retained intron upper lobe of left lung (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 3532.67 31.97 19.87 62.51 RPL17-214 retained intron upper lobe of left lung (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 2189.36 19.81 12.32 37.67 RPL17-214 retained intron upper lobe of left lung (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 295380.00 98.27 1661.58 99.97 SNORD43-201 snoRNA upper lobe of left lung (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 96.00 0.03 0.54 100.0 SNORD43-201 snoRNA upper lobe of left lung (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 142.00 41.40 0.80 100.0 MIR151B-201 miRNA upper lobe of left lung (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 34.00 0.67 0.19 100.0 SNORD3A-201 snoRNA upper lobe of left lung (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 5272.00 33.03 29.66 100.0 NSRP1-214 protein coding upper lobe of left lung (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 6680.00 41.85 37.58 73.8 NSRP1-214 protein coding upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 3143.00 22.46 17.68 95.01 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 2371.00 16.95 13.34 85.81 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)