ENCFF694VGD

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR996VHB
Description: Part of ENCODE experiment ENCSR996VHB. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 293.00 1.24 1.65 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 490.00 2.07 2.76 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 29.00 0.01 0.16 100.0 ENST00000563103 lncRNA upper lobe of left lung (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 1627.00 22.81 9.15 100.0 RPL4-207 retained intron upper lobe of left lung (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 1451.00 20.34 8.16 100.0 RPL4-207 retained intron upper lobe of left lung (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 153208.00 95.64 861.83 98.45 ENST00000565336 lncRNA upper lobe of left lung (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 1256.00 0.78 7.07 64.61 ENST00000565336 lncRNA upper lobe of left lung (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 5566.00 32.23 31.31 100.0 RBMX-210 retained intron upper lobe of left lung (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 5422.00 31.40 30.50 100.0 RBMX-210 retained intron upper lobe of left lung (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 48.00 0.28 0.27 17.84 RBMX-210 retained intron upper lobe of left lung (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 408.00 13.27 2.30 100.0 RPL4-214 retained intron upper lobe of left lung (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 3674.30 14.99 20.67 20.26 POLG-DT-202 lncRNA upper lobe of left lung (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 15379.84 62.76 86.52 84.77 POLG-DT-202 lncRNA upper lobe of left lung (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 200.00 0.82 1.13 100.0 POLG-DT-202 lncRNA upper lobe of left lung (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1654.00 38.97 9.30 100.0 ENST00000570843 lncRNA upper lobe of left lung (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 5690.00 87.39 32.01 100.0 MIR497HG-207 lncRNA upper lobe of left lung (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 64595.00 98.25 363.36 98.77 MIR22HG-212 lncRNA upper lobe of left lung (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 632.00 52.06 3.56 63.07 SNORD53B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 370.00 30.48 2.08 36.93 SNORD53B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 617.00 85.58 3.47 100.0 ENST00000578036 lncRNA upper lobe of left lung (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 301.00 77.38 1.69 100.0 RPL23A-207 protein coding upper lobe of left lung (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 647.00 91.77 3.64 100.0 MIR744-201 miRNA upper lobe of left lung (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 242.00 80.67 1.36 100.0 MIR378C-201 miRNA upper lobe of left lung (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 10158.00 75.69 57.14 84.76 MIR142HG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 19.00 0.14 0.11 100.0 MIR142HG-201 lncRNA upper lobe of left lung (Tissue)