ENCFF694VGD

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR996VHB
Description: Part of ENCODE experiment ENCSR996VHB. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 150.00 0.51 0.84 49.67 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 669.00 2.26 3.76 88.84 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 922.00 3.11 5.19 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1332.00 4.49 7.49 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 933.00 25.78 5.25 100.0 GNL3-211 retained intron upper lobe of left lung (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 2142.00 59.19 12.05 100.0 GNL3-211 retained intron upper lobe of left lung (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 165.00 27.14 0.93 100.0 RPL5-205 retained intron upper lobe of left lung (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 148.00 2.19 0.83 100.0 ZBED9-AS1-201 lncRNA upper lobe of left lung (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2103.00 90.37 11.83 100.0 RPS3A-206 retained intron upper lobe of left lung (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 12207.00 97.71 68.67 100.0 COX7C-203 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 12194.00 18.01 68.59 99.55 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 2945.00 4.35 16.57 100.0 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 37749.46 55.76 212.35 83.66 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 10698.56 15.80 60.18 30.15 RACK1-229 protein coding upper lobe of left lung (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 110.00 3.61 0.62 100.0 RACK1-230 retained intron upper lobe of left lung (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 166.00 1.65 0.93 100.0 RNA5SP486-201 rRNA pseudogene upper lobe of left lung (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 6128.00 90.49 34.47 100.0 SCARNA5-201 scaRNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 3779.00 5.15 21.26 99.0 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 400.00 0.55 2.25 100.0 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 67.00 0.09 0.38 41.61 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 4800.00 6.54 27.00 78.51 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 22.00 0.03 0.12 100.0 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 766.00 1.04 4.31 77.06 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 950.00 1.30 5.34 100.0 RNY4-201 misc RNA upper lobe of left lung (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 14.00 0.02 0.08 46.67 RNY4-201 misc RNA upper lobe of left lung (Tissue)