ENCFF694VGD

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR996VHB
Description: Part of ENCODE experiment ENCSR996VHB. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 370.00 0.12 2.08 43.89 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 199058.00 64.74 1119.75 98.11 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1931.00 0.63 10.86 44.24 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 2955.00 0.96 16.62 100.0 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 16954.00 5.51 95.37 70.32 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 371.00 0.12 2.09 33.54 EIF4A2-219 retained intron upper lobe of left lung (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 12.00 4.78 0.07 100.0 RPS8-207 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 249.00 31.92 1.40 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 92.00 11.79 0.52 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 122.00 15.64 0.69 100.0 RPL7A-206 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 254.00 0.30 1.43 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 5616.00 6.70 31.59 97.28 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 66311.00 79.15 373.01 95.18 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 8.00 0.01 0.05 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 1461.00 1.74 8.22 100.0 RPL21-209 retained intron upper lobe of left lung (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 31.00 12.60 0.17 100.0 GABRE-209 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 20.00 0.17 0.11 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 263.00 2.21 1.48 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 407.00 3.43 2.29 100.0 RPL13A-212 retained intron upper lobe of left lung (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 409.00 10.03 2.30 100.0 RPL7A-207 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1370.00 33.61 7.71 100.0 RPL7A-207 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 1158.00 86.29 6.51 100.0 RGS11-208 retained intron upper lobe of left lung (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 1717.00 66.97 9.66 92.56 NOP56-217 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 669.00 2.26 3.76 88.84 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 922.00 3.11 5.19 100.0 RABGGTB-213 protein coding CDS not defined upper lobe of left lung (Tissue)