ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 3435.00 0.44 19.68 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 43664.00 5.57 250.19 97.81 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 861.19 0.11 4.93 67.97 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 3007.00 0.38 17.23 84.9 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 276402.00 35.28 1583.76 99.65 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 2443.00 0.31 14.00 79.55 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 169967.00 21.70 973.89 99.44 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 35815.00 4.57 205.22 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 55431.00 7.08 317.61 99.81 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 64.00 0.01 0.37 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 190.00 0.02 1.09 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1790.00 0.23 10.26 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 210.00 0.03 1.20 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 937.00 0.12 5.37 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 45366.00 5.79 259.94 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 113.00 0.01 0.65 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 6028.00 0.77 34.54 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 70567.00 9.01 404.34 89.62 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 399.00 0.05 2.29 87.31 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 8.00 0.00 0.05 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 6.00 0.00 0.03 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 4319.00 0.55 24.75 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 2236.00 0.29 12.81 81.93 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 493.39 0.06 2.83 38.94 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 3834.00 0.49 21.97 100.0 SNHG1-248 lncRNA stomach (Tissue)