ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1571.00 0.20 9.00 57.29 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 2205.00 0.28 12.63 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 70.00 0.01 0.40 100.0 SNHG1-248 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 8539.00 15.73 48.93 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 9327.85 17.18 53.45 91.02 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 229.00 0.42 1.31 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 141.00 0.26 0.81 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 130.17 0.24 0.75 1.27 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 8507.00 15.67 48.74 99.91 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 5156.00 9.50 29.54 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 5763.00 10.61 33.02 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 97.00 0.18 0.56 100.0 SNHG5-273 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 1521.00 1.58 8.72 65.2 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 89542.00 93.17 513.07 99.03 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 891.00 0.93 5.11 37.5 MEG8-251 lncRNA stomach (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 1678.00 1.75 9.61 93.38 MEG8-251 lncRNA stomach (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 466.00 25.80 2.67 100.0 FMN2-209 protein coding CDS not defined stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 16.00 0.13 0.09 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 79.00 0.62 0.45 15.86 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 1601.00 12.62 9.17 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 1091.00 8.60 6.25 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 1438.00 11.34 8.24 100.0 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 419.00 3.30 2.40 84.14 LINC02739-203 lncRNA stomach (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 909.00 31.05 5.21 100.0 SNHG10-212 lncRNA stomach (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 6615.00 49.15 37.90 100.0 MIR222HG-206 lncRNA stomach (Tissue)