ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 1503.00 33.23 8.61 100.0 HCN2-201 protein coding stomach (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 4.00 12.50 0.02 100.0 SLC49A4-201 protein coding stomach (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 10.00 3.36 0.06 100.0 ATP5MC3-201 protein coding stomach (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 229.00 73.63 1.31 100.0 CDC25A-201 protein coding stomach (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 6545.00 86.59 37.50 100.0 RUNX3-201 protein coding stomach (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 206.00 5.10 1.18 100.0 BLOC1S4-201 protein coding stomach (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 338.00 17.70 1.94 100.0 ATAD5-201 protein coding stomach (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 110.00 2.48 0.63 100.0 SLITRK5-201 protein coding stomach (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 26.00 20.80 0.15 100.0 HASPIN-201 protein coding stomach (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 2426.00 97.78 13.90 100.0 ATG101-201 protein coding stomach (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 195.00 77.08 1.12 100.0 PRICKLE1-201 protein coding stomach (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 1129.00 96.25 6.47 98.86 MIR133A2-201 miRNA stomach (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 17.00 21.52 0.10 100.0 PBLD-204 protein coding stomach (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 156283.00 70.62 895.49 94.75 MIRLET7BHG-201 lncRNA stomach (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 37672.00 17.02 215.86 76.72 MIRLET7BHG-201 lncRNA stomach (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 41743.00 5.38 239.18 52.74 MIR375-201 miRNA stomach (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 720347.00 92.79 4127.52 96.54 MIR375-201 miRNA stomach (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 6711.00 47.80 38.45 100.0 MIR30E-201 miRNA stomach (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 6019.00 42.87 34.49 100.0 MIR30E-201 miRNA stomach (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 1013.00 45.10 5.80 100.0 MIR29A-201 miRNA stomach (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 377.00 81.25 2.16 100.0 MIR345-201 miRNA stomach (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 12679.00 97.93 72.65 100.0 MIR16-2-201 miRNA stomach (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 23.00 0.64 0.13 100.0 MIR340-201 miRNA stomach (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 3453.00 96.05 19.79 100.0 MIR340-201 miRNA stomach (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 1727.00 46.03 9.90 100.0 MIR107-201 miRNA stomach (Tissue)