ENCFF685KEG

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR418FVT
Description: Part of ENCODE experiment ENCSR418FVT. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 165.00 14.44 0.95 100.0 FTX-219 lncRNA stomach (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 738.00 64.57 4.23 89.89 FTX-219 lncRNA stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 542.00 2.85 3.11 63.02 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 713.00 3.75 4.09 67.26 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 7936.00 41.79 45.47 82.35 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 318.00 1.67 1.82 36.98 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 3648.00 19.21 20.90 62.72 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 881.00 4.64 5.05 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 734.00 3.87 4.21 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 796.00 4.19 4.56 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 611.00 3.15 3.50 81.68 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 1216.00 6.27 6.97 93.47 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 12.00 0.06 0.07 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 1070.00 5.51 6.13 54.68 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 30.00 0.15 0.17 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 152.00 0.78 0.87 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 4940.00 25.46 28.31 62.75 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 145.00 0.75 0.83 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 6090.00 31.39 34.90 73.29 ENST00000651540 lncRNA stomach (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 3192.00 0.91 18.29 100.0 MIRLET7A1HG-203 lncRNA stomach (Tissue)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 1020.00 91.32 5.84 100.0 MEG8-225 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 8422.00 62.08 48.26 100.0 SNHG29-232 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 1718.00 12.66 9.84 100.0 SNHG29-232 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 741.00 5.46 4.25 100.0 SNHG29-232 lncRNA stomach (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 1.00 0.01 0.01 100.0 SNHG29-232 lncRNA stomach (Tissue)