ENCFF682YQJ

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR593MVW
Description: Part of ENCODE experiment ENCSR593MVW. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 3340.00 56.90 16.26 97.12 MIR99AHG-370 lncRNA spleen (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 1571.00 26.76 7.65 93.35 MIR99AHG-370 lncRNA spleen (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 497.00 97.45 2.42 100.0 HPS4-237 retained intron spleen (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 524.00 96.32 2.55 100.0 MEG8-253 lncRNA spleen (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 188.00 39.75 0.92 100.0 MEG9-206 lncRNA spleen (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 4.00 0.85 0.02 100.0 MEG9-206 lncRNA spleen (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 3.00 0.63 0.01 100.0 MEG9-206 lncRNA spleen (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 174.00 11.36 0.85 100.0 DNAJC5-203 nonsense mediated decay spleen (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 1253.00 18.87 6.10 100.0 ENST00000707189 TEC spleen (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 634.00 0.45 3.09 100.0 MIR17HG-214 lncRNA spleen (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 93.00 0.07 0.45 100.0 MIR17HG-214 lncRNA spleen (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 116.00 0.08 0.56 100.0 MIR17HG-214 lncRNA spleen (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 41978.81 29.89 204.42 33.35 MIR17HG-214 lncRNA spleen (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 5.00 0.00 0.02 100.0 MIR17HG-214 lncRNA spleen (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 113.00 0.08 0.55 100.0 MIR17HG-214 lncRNA spleen (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 94041.45 66.96 457.93 72.02 MIR17HG-214 lncRNA spleen (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 879.00 0.63 4.28 100.0 MIR17HG-214 lncRNA spleen (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 11694.00 4.67 56.94 100.0 SNHG32-223 lncRNA spleen (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 525.00 0.21 2.56 100.0 SNHG32-223 lncRNA spleen (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 62.00 0.02 0.30 100.0 SNHG32-223 lncRNA spleen (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 3942.00 1.58 19.20 70.3 SNHG32-223 lncRNA spleen (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 230095.00 91.94 1120.45 100.0 SNHG32-223 lncRNA spleen (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 34748.00 83.98 169.21 98.83 SNHG32-227 lncRNA spleen (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 3658.00 8.84 17.81 100.0 SNHG32-227 lncRNA spleen (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 77.00 0.19 0.37 100.0 SNHG32-227 lncRNA spleen (Tissue)