ENCFF682YQJ

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR593MVW
Description: Part of ENCODE experiment ENCSR593MVW. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 534.32 1.03 2.60 87.88 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 508.00 0.98 2.47 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 205.00 0.40 1.00 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 39.62 0.08 0.19 6.52 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 19156.00 36.91 93.28 99.98 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 1895.00 3.65 9.23 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 8116.00 15.64 39.52 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 826.00 1.59 4.02 100.0 SNHG5-273 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 1683.00 1.41 8.20 70.15 MEG8-251 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 111230.00 93.04 541.63 97.67 MEG8-251 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 844.00 0.71 4.11 34.06 MEG8-251 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 568.00 0.48 2.77 94.35 MEG8-251 lncRNA spleen (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 8.00 0.01 0.04 100.0 MEG8-251 lncRNA spleen (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 251.00 29.08 1.22 100.0 FMN2-209 protein coding CDS not defined spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 1066.00 7.67 5.19 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 67.00 0.48 0.33 16.88 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 449.00 3.23 2.19 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 3243.00 23.34 15.79 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 243.00 1.75 1.18 100.0 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 330.00 2.38 1.61 83.12 LINC02739-203 lncRNA spleen (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 1692.00 35.83 8.24 100.0 SNHG10-212 lncRNA spleen (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2496.00 45.09 12.15 100.0 MIR222HG-206 lncRNA spleen (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 956.00 17.27 4.66 55.2 MIR222HG-206 lncRNA spleen (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 12.00 0.22 0.06 100.0 MIR222HG-206 lncRNA spleen (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 512.00 56.57 2.49 100.0 RPSA-216 retained intron spleen (Tissue)