ENCFF682YQJ

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR593MVW
Description: Part of ENCODE experiment ENCSR593MVW. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 6822.00 0.62 33.22 79.49 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 223147.00 20.12 1086.61 98.69 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 71672.00 6.46 349.01 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 130665.00 11.78 636.27 99.8 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 182.00 0.02 0.89 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 372.00 0.03 1.81 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 2838.00 0.26 13.82 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 212.00 0.02 1.03 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 2015.00 0.18 9.81 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 97757.00 8.82 476.03 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 262.00 0.02 1.28 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 6386.00 0.58 31.10 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 116136.00 10.47 565.52 85.26 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 16.00 0.00 0.08 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 1514.00 0.14 7.37 87.11 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 97.00 0.01 0.47 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 15.00 0.00 0.07 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 6445.00 0.58 31.38 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1968.00 0.18 9.58 85.57 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 419.92 0.04 2.04 31.96 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 3282.00 0.30 15.98 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1609.00 0.15 7.84 63.45 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 5798.00 0.52 28.23 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 138.00 0.01 0.67 100.0 SNHG1-248 lncRNA spleen (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 6337.00 12.21 30.86 100.0 SNHG5-273 lncRNA spleen (Tissue)