ENCFF682YQJ

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR593MVW
Description: Part of ENCODE experiment ENCSR593MVW. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 837.00 9.46 4.08 100.0 RPL13A-212 retained intron spleen (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 34.00 0.38 0.17 100.0 RPL13A-212 retained intron spleen (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 147.00 1.66 0.72 100.0 RPL13A-212 retained intron spleen (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 314.00 5.46 1.53 100.0 RPL7A-207 protein coding CDS not defined spleen (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1795.00 31.21 8.74 100.0 RPL7A-207 protein coding CDS not defined spleen (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 41.00 82.00 0.20 100.0 RGS11-208 retained intron spleen (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 10343.00 76.34 50.37 94.29 NOP56-217 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 5816.00 12.82 28.32 88.98 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 848.00 1.87 4.13 100.0 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 2126.00 4.69 10.35 65.5 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 6351.00 14.00 30.93 100.0 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 11279.00 24.86 54.92 100.0 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 1120.00 2.47 5.45 34.5 RABGGTB-213 protein coding CDS not defined spleen (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 5492.00 76.58 26.74 100.0 GNL3-211 retained intron spleen (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 1072.00 14.95 5.22 100.0 GNL3-211 retained intron spleen (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 335.00 48.98 1.63 100.0 RPL5-205 retained intron spleen (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 93.00 1.59 0.45 100.0 ZBED9-AS1-201 lncRNA spleen (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 4701.00 92.54 22.89 100.0 RPS3A-206 retained intron spleen (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 27727.00 97.40 135.02 100.0 COX7C-203 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 48279.22 49.12 235.10 83.53 RACK1-229 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 10332.65 10.51 50.31 23.39 RACK1-229 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 26630.00 27.09 129.67 99.75 RACK1-229 protein coding spleen (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 4174.00 4.25 20.33 100.0 RACK1-229 protein coding spleen (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 964.00 12.04 4.69 99.48 RACK1-230 retained intron spleen (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 21.00 0.26 0.10 19.81 RACK1-230 retained intron spleen (Tissue)