ENCFF682YQJ

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR593MVW
Description: Part of ENCODE experiment ENCSR593MVW. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 1048.00 12.00 5.10 55.69 MIR194-2HG-201 lncRNA spleen (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 7573.00 86.75 36.88 95.53 MIR194-2HG-201 lncRNA spleen (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 21.00 91.30 0.10 100.0 RPS7P15-201 processed pseudogene spleen (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 1344.00 14.56 6.54 100.0 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 28.00 0.30 0.14 100.0 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 2736.00 29.65 13.32 89.88 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 925.00 10.02 4.50 100.0 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 61.00 92.42 0.30 100.0 MRPL32-203 nonsense mediated decay spleen (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 25.00 64.10 0.12 100.0 ENST00000436739 lncRNA spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 19.00 0.06 0.09 100.0 TMEM107-204 protein coding spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 640.00 2.01 3.12 100.0 TMEM107-204 protein coding spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 15342.00 48.20 74.71 84.0 TMEM107-204 protein coding spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 6224.00 19.55 30.31 91.52 TMEM107-204 protein coding spleen (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 590.00 48.96 2.87 100.0 SNHG16-201 lncRNA spleen (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 20122.00 81.78 97.98 94.48 SNORD105B-201 snoRNA spleen (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 396.00 31.58 1.93 49.25 SNORD121B-201 snoRNA spleen (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 1831.00 63.69 8.92 100.0 SNORD127-201 snoRNA spleen (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 10450.00 92.45 50.89 100.0 SNORD42B-201 snoRNA spleen (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 125.00 1.99 0.61 100.0 RNY4P25-201 misc RNA spleen (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 276.00 78.63 1.34 100.0 SNORD121A-201 snoRNA spleen (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1725.00 93.14 8.40 100.0 SNORD126-201 snoRNA spleen (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 2953.00 56.46 14.38 100.0 SNHG12-201 retained intron spleen (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 4134.00 95.30 20.13 100.0 SMC1A-204 retained intron spleen (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 517.00 14.61 2.52 100.0 DDX39B-219 retained intron spleen (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1620.00 45.78 7.89 100.0 DDX39B-219 retained intron spleen (Tissue)