ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 15.00 0.00 0.06 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 27591.00 19.14 112.31 100.0 SNHG14-315 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 81371.00 56.44 331.23 96.53 SNHG14-315 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 23444.00 16.26 95.43 89.02 SNHG14-315 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 8550.00 0.45 34.80 94.12 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 4073.00 0.21 16.58 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 989326.04 51.99 4027.20 55.42 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 146.00 0.01 0.59 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 183.00 0.01 0.74 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 909917.51 47.82 3703.95 48.85 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 168.00 0.01 0.68 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 3664.00 0.19 14.91 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 1221.00 0.06 4.97 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 23.00 0.00 0.09 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 7143.00 0.38 29.08 93.86 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 200.00 9.00 0.81 59.17 SNHG14-323 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 536.00 0.46 2.18 36.66 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 1990.00 1.71 8.10 92.26 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 2.00 0.00 0.01 100.0 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 109554.00 94.38 445.96 98.61 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 957.00 0.82 3.90 67.02 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 35977.00 64.78 146.45 89.78 SNHG14-336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 18331.00 33.01 74.62 61.31 SNHG14-336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 36327.00 91.14 147.87 98.59 SNHG14-341 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 36.00 1.98 0.15 100.0 NCL-211 retained intron esophagus muscularis mucosa (Tissue)