ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 1266.00 0.16 5.15 79.52 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 55566.00 6.91 226.19 98.93 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 11286.00 1.40 45.94 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 93318.00 11.60 379.86 99.87 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 384.00 0.05 1.56 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 58.00 0.01 0.24 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 768.00 0.10 3.13 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 88.00 0.01 0.36 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 427.00 0.05 1.74 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 425.00 0.05 1.73 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 10172.00 1.26 41.41 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 191.00 0.02 0.78 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1275.00 0.16 5.19 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 75554.00 9.39 307.55 78.96 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 8.00 0.00 0.03 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 216389.00 26.90 880.84 99.44 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 37.00 0.00 0.15 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 6.00 0.00 0.02 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 16081.00 2.00 65.46 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1160.00 0.14 4.72 79.56 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 948.88 0.12 3.86 37.48 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 638.00 0.08 2.60 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1342.00 0.17 5.46 61.59 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1329.00 0.17 5.41 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 103.00 0.01 0.42 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)