ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 34.00 10.46 0.14 100.0 HCN2-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 10.00 35.71 0.04 100.0 SLC49A4-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 23.00 2.17 0.09 100.0 ATP5MC3-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 92.00 85.19 0.37 100.0 CDC25A-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 1802.00 89.21 7.34 100.0 RUNX3-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 83.00 22.55 0.34 100.0 BLOC1S4-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 269.00 20.63 1.10 100.0 ATAD5-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 82.00 9.58 0.33 100.0 SLITRK5-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 7.00 33.33 0.03 100.0 HASPIN-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 333.00 96.80 1.36 100.0 ATG101-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 9.00 32.14 0.04 100.0 PRICKLE1-201 protein coding esophagus muscularis mucosa (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 4102.00 96.72 16.70 99.13 MIR133A2-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 3.00 50.00 0.01 100.0 PBLD-204 protein coding esophagus muscularis mucosa (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 365118.00 90.86 1486.27 98.12 MIRLET7BHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 16117.00 4.01 65.61 80.9 MIRLET7BHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 7.00 3.41 0.03 63.64 MIR375-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 197.00 96.10 0.80 99.49 MIR375-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 10748.00 69.43 43.75 100.0 MIR30E-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 4073.00 26.31 16.58 100.0 MIR30E-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 218.00 41.37 0.89 100.0 MIR29A-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 70.00 92.11 0.28 100.0 MIR345-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 7322.00 98.93 29.81 100.0 MIR16-2-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 18.00 1.50 0.07 100.0 MIR340-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 1158.00 96.18 4.71 100.0 MIR340-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 965.00 40.58 3.93 100.0 MIR107-201 miRNA esophagus muscularis mucosa (Tissue)