ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 580.00 51.74 2.36 100.0 FMN2-209 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 156.00 3.73 0.64 48.9 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 44.00 1.05 0.18 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 163.00 3.90 0.66 51.1 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 307.00 7.35 1.25 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 572.00 13.69 2.33 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 198.00 4.74 0.81 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 1.00 100.00 0.00 100.0 MIR124-1HG-216 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 241.00 21.99 0.98 100.0 SNHG10-212 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 15813.03 30.30 64.37 31.07 SNHG19-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 34864.64 66.80 141.92 78.21 SNHG19-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 10344.00 85.87 42.11 100.0 MIR222HG-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 947.00 7.86 3.85 79.45 MIR222HG-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 38.00 0.32 0.15 100.0 MIR222HG-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 36.00 19.57 0.15 100.0 RPSA-216 retained intron esophagus muscularis mucosa (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 3370.00 11.97 13.72 89.22 MIR99AHG-370 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 22974.00 81.60 93.52 97.11 MIR99AHG-370 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 140.00 91.50 0.57 100.0 HPS4-237 retained intron esophagus muscularis mucosa (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 24.00 96.00 0.10 100.0 MEG8-253 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 1.00 0.81 0.00 100.0 MEG9-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 53.00 42.74 0.22 100.0 MEG9-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1014.00 13.43 4.13 100.0 DNAJC5-203 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 977.00 32.21 3.98 100.0 ENST00000707189 TEC esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 2451.00 2.92 9.98 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 25088.80 29.89 102.13 33.69 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)